PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G142000.1
Common NameB456_001G142000, LOC105794585
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 436aa    MW: 48906.9 Da    PI: 5.3098
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G142000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.11.7e-22223279156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRla 56 
                         kpr+ Wt+eLH+ Fv av+qL   ++A+Pk+i   +++m+v gL++++++SHLQkYRl+
  Gorai.001G142000.1 223 KPRVIWTQELHDIFVIAVNQL--RQQAVPKKIlerMQAMNVTGLSRANIASHLQKYRLH 279
                         79*******************..*********33335789*****************97 PP

2Response_reg68.62.7e-23361421107
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vd++++ + +l+++l+k  y ev++++ ++ al+ll+e +  +D++l+D+ mp+mdGl+ll+ i  e  +lp++++++ + +  + + 
  Gorai.001G142000.1  36 VLVVDENRTCLLVLETMLRKLSY-EVTTCQLARHALALLREDKnrFDIVLCDLHMPEMDGLKLLEIIGLEM-DLPVVMMSSDDGKGVIMKG 124
                         89*********************.***************887778********************996644.8****************** PP

                         HHTTESEEEESS--HHHH CS
        Response_reg  90 lkaGakdflsKpfdpeel 107
                         +  Ga d+l+Kp+++e++
  Gorai.001G142000.1 125 IIHGACDYLVKPVQMEAV 142
                         ************999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.3E-3633157No hitNo description
SuperFamilySSF521725.83E-3233160IPR011006CheY-like superfamily
SMARTSM004487.8E-2634146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.54535150IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-2036142IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.76E-2437149No hitNo description
SuperFamilySSF466891.08E-14220282IPR009057Homeodomain-like
PROSITE profilePS5129411.06220281IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-22221282IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-18223279IPR006447Myb domain, plants
PfamPF002497.5E-6228277IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTYVVGIKVI ATTYTVCFFN AMDGGFDGDF PAGLKVLVVD ENRTCLLVLE TMLRKLSYEV  60
TTCQLARHAL ALLREDKNRF DIVLCDLHMP EMDGLKLLEI IGLEMDLPVV MMSSDDGKGV  120
IMKGIIHGAC DYLVKPVQME AVRLIWQHVV RKRQRALGDF QQLRGNIHAT GRTLLLKQAK  180
NAVDQMPARE RRILKRAREN DDEDEDDEDD EGELSEEVTT AKKPRVIWTQ ELHDIFVIAV  240
NQLRQQAVPK KILERMQAMN VTGLSRANIA SHLQKYRLHL RKGGGQPLAD NRDVNLNPSI  300
GQASSFNQFN LQFQQPTATG SSCNQLPMQN LMITPQPCTI NDSVVPDSTQ CFPTELSTND  360
LSQPNLLFQN DVPTSNVEHL YRNVGVNVSE LSNPISSVDD SSVNQLIYEP SVLVRQYDQG  420
DFFHGGFPRL ETLSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-15219282162ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479289.10.0PREDICTED: two-component response regulator ARR2-like
SwissprotQ940D01e-83ARR1_ARATH; Two-component response regulator ARR1
TrEMBLA0A0D2PRA60.0A0A0D2PRA6_G
STRINGPOPTR_0010s00320.13e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-77response regulator 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]